#!/bin/csh
#  Request maximum wallclock time for job
#PBS -l walltime=01:00:00
#  select=<number nodes>,ncpus=<cores/node>,mpiprocs=<MPI procs/node>
#  Total cores requested = <number of nodes> X <MPI procs/node>
#PBS -l select=1:ncpus=4:mpiprocs=1
# Specify how MPI processes are distributed on nodes
#PBS -l place=scatter
#  Request job name
#PBS -N linux_matlab
#  Request PBS job queue for job
#PBS -q staff
#  Specify keep stdout/stderr files from job
#PBS -k eo
#  Indicate required ABAQUS licenses
###PBS -l matlab=1
# Indicate Project ID
#PBS -A ARLAP96090RAY
#  Request environment variables be exported from script
#PBS -V
#
#
## End of preamble, beginning of shell script ##
set JOBID=`echo $PBS_JOBID | cut -f1 -d.`
echo job $JOBID starting at `date` on `hostname`
cd ${HOME}/pbstest/MATLAB
echo starting in `pwd`
set outfile=output.txt
set outdir=$HOME/pbstest/MATLAB/outdir
set TMPD=/usr/var/tmp/$LOGNAME/$JOBID
if (! -e $TMPD ) mkdir -p $TMPD
set copy_to_archive=NO
if ($copy_to_archive == "YES") then
  if (! -e $outdir ) mkdir -p $outdir
endif
set indir=`pwd`
#set infile=input.m
set infile=test.m
cp ${indir}/${infile} $TMPD

cd $TMPD

ls -l

module load matlab7.9.0

echo matlab  $infile >& $outfile
matlab -nodisplay -nojvm -nodesktop  < $infile >& $outfile

set st=$status
echo execution ended at `date` with status $st

if ($copy_to_archive == "YES") then
echo "...copying output tar file to archive"


ls -l

tar cf ../output.tar.i$LSB_JOBID *
set st=\$status
if ( \$st != 0 ) then
  echo Tar of files failed, look in $TMPD for output files!
  #exit \$st
endif

mv ../output.tar.${LSB_JOBID} $outdir
cd $outdir
tar xf output.tar.${LSB_JOBID}
set st=\$status
if ( \$st != 0 ) then
  echo Tar of files failed, look in $TMPD for output files!
  #exit \$st
endif

echo output file mv for job $LSB_JOBID ended at `date` with status \$st
if ( \$st == 0 ) then
  echo files copied back to $outdir successfully, will rmdir $TMPD
  rm -r $TMPD
endif
cd ..
chmod -R 755 $outdir
exit \$st
endif